I am co-director of the Center for Bioinformatics and Functional Genomics (BFG) at Cedars-Sinai, with expertise in cancer epigenomics, functional annotation and prediction of noncoding gene regulatory regions, and whole-genome sequencing technologies. From 2008 to 2014, I was director of bioinformatics for the University of Southern California/Norris Comprehensive Cancer Center Sequencing Core, where my group developed software pipelines to analyze whole-genome bisulfite-sequencing (WGBS), ChIP-seq, RNA-seq and other NGS methods."
- Integrative Genomics Viewer (IGV) Bisulfite Methylation Viewer
- Bis-SNP: Combined DNA Methylation and SNP Calling for Bisulfite-Sequencing Data
- FunciSNP: An R/Bioconductor Tool Integrating Functional Noncoding Data Sets with Genetic Association Studies to Identify Candidate Regulatory SNPs
Learn more about the scientists, faculty members, investigators and other healthcare professionals of the Berman Laboratory, whose dedicated efforts lead to groundbreaking discoveries.
Silva TC, Coetzee SG, Yao L, Hazelett DJ, Noushmehr H, Berman BP.
bioRxiv. 2017 Jun 11.
Coetzee SG, Ramjan Z, Dinh HQ, Berman BP, Hazelett DJ.
bioRxiv. 2017 May 23.
Lin DC, Dinh HQ, Xie JJ, Mayakonda A, Jiang YY, Ding LW, He JZ, Xu XE, Hao JJ, Wang MR, Xu LY, Li EM, Berman BP, Koeffler HP.
[published online ahead of print August 31, 2017]. Gut.